A new species of rheophilic armored catfish of Rineloricaria (Siluriformes: Loricariidae) from the Vaupés River, Amazonas basin, Colombia.

A new rheophilic species of the genus Rineloricaria is described for the Amazon basin in Colombia. Rineloricaria cachivera n. sp. differs from its congeners by having anterior to the first predorsal plate, an inconspicuous saddle-like mark; the presence of dark, diffuse blotches, present as unified dark colouration along most of the dorsal portion of the head, without bands or spots on the head; a long snout that occupies more than half the head length (HL), between 58.0% and 66.3% HL; a naked portion on the cleithral area from the border of lower lip reaching the origin of pectoral fin; and by having five series of lateral plates in longitudinal rows below the dorsal fin. The new species is morphologically similar to Rineloricaria daraha; however, it can be distinguished by the presence of six branched pectoral fin rays (vs. seven) and the lower lip surface with short thick papillae (vs. long finger papillae). An identification key to the Rineloricaria species of the Amazon River basin in Colombia is provided. The new species is herein categorized as Least Concern, following the IUCN criteria.

RAPIDS, a method for sub-compartmental identification of protein interactomes.

Protein-protein interactions are central to most cellular processes and their dysregulation has been related to the development of various diseases. Proximity-based labeling methods are used to identify the endogenous interaction partners of specific proteins of interest (POIs). The POI is fused to promiscuous enzymes, which generate reactive species in vivo and label proteins in close vicinity. APEX-based proximity labeling techniques utilize an engineered ascorbate peroxidase, which in the presence of H2O2 oxidizes biotin-phenol to short lived biotin-phenoxyl radicals that biotinylate nearby proteins. The biotinylated proteins are enriched by biotin affinity capture and identified by mass spectrometry. We devised an advanced method, RAPIDS, in which the peroxidase is physically separated from the POI and only a rapamycin-induced dimerization using the FRB-FKBP12 system brings the two proteins together. RAPIDS improves the specificity of APEX-based interactome analysis by strictly eliminating false positives. In this chapter, we describe this method in detail, with VAPB as a protein of interest and versions of APEX2 with different subcellular localizations. VAPB localizing to different cellular compartments, the endoplasmic reticulum and the inner nuclear membrane, yielded distinct sets of proximity partners as identified by RAPIDS.

Probing the Environment of Emerin by Enhanced Ascorbate Peroxidase 2 (APEX2)-Mediated Proximity Labeling.

Emerin is one of the best characterized proteins of the inner nuclear membrane, but can also occur at the level of the endoplasmic reticulum. We now use enhanced ascorbate peroxidase 2 (APEX2) to probe the environment of emerin. APEX2 can be used as a genetic tag that produces short-lived yet highly reactive biotin species, allowing the modification of proteins that interact with or are in very close proximity to the tagged protein. Biotinylated proteins can be isolated using immobilized streptavidin and analyzed by mass spectrometry. As an alternative to the standard approach with a genetic fusion of APEX2 to emerin, we also used RAPIDS (rapamycin- and APEX-dependent identification of proteins by SILAC), a method with improved specificity, where the peroxidase interacts with the protein of interest (i.e., emerin) only upon addition of rapamycin to the cells. We compare these different approaches, which, together, identify well-known interaction partners of emerin like lamin A and the lamina associated polypeptide 1 (LAP1), as well as novel proximity partners.

Proteomic mapping by rapamycin-dependent targeting of APEX2 identifies binding partners of VAPB at the inner nuclear membrane.

Vesicle-associated membrane protein-associated protein B (VAPB) is a tail-anchored protein that is present at several contact sites of the endoplasmic reticulum (ER). We now show by immunoelectron microscopy that VAPB also localizes to the inner nuclear membrane (INM). Using a modified enhanced ascorbate peroxidase 2 (APEX2) approach with rapamycin-dependent targeting of the peroxidase to a protein of interest, we searched for proteins that are in close proximity to VAPB, particularly at the INM. In combination with stable isotope labeling with amino acids in cell culture (SILAC), we confirmed many well-known interaction partners at the level of the ER with a clear distinction between specific and nonspecific hits. Furthermore, we identified emerin, TMEM43, and ELYS as potential interaction partners of VAPB at the INM and the nuclear pore complex, respectively.

A new species of Characidium (Characiformes: Crenuchidae) from coastal basins in the Atlantic Rainforest of eastern Brazil, with phylogenetic and phylogeographic insights into the Characidium alipioi species group

A new species of Characidium from southeastern Brazil is described based on morphological and molecular evidence from specimens collected between the rio Jucuruçu and rio Doce basins. The new species belongs to a group of species within Characidium with an unscaled area in the isthmus and is distinguished from these species, except C. alipioi, C. fasciatum, C. hasemani, and C. kamakan, by the greater distance (greater than 10% SL) and presence of 5-7 scales between the anus and the anal fin, and presence of 14 series of scales around the caudal peduncle. The species is distinguished from C. alipioi by having 4 series of scales above the lateral line (vs. 5 series) and greater distance between the anus and the anal fin; from C. fasciatum and C. kamakan, by the smaller body depth at the dorsal-fin origin, at the anal-fin origin, and at the caudal peduncle; from C. hasemani, by the short distances between the tip of the snout and the pelvic fin, the tip of the snout and the anal fin, and the tip of the snout and the tip of anal fin. The new species forms a presumably monophyletic group with C. alipioi and C. kamakan.(AU)

Uma nova espécie de Characidium do sudeste do Brasil é descrita com base em evidências morfológicas e moleculares provenientes de exemplares coletados entre as bacias dos rios Jucuruçu e Doce. A nova espécie pertence a um grupo de espécies de Characidium com área desprovida de escamas no ístmo e difere dessas espécies, exceto C. alipioi, C. fasciatum, C. hasemani e C. kamakan, pela grande distância (maior que 10% do comprimento padrão, CP) e presença de 5-7 escamas entre o ânus e a nadadeira anal, e pela presença de 14 séries de escamas em torno do pedúnculo caudal. A espécie difere de C. alipioi pela presença de 4 séries de escamas acima da linha lateral (vs. 5 séries) e maior distância entre o ânus e a nadadeira anal; de C. fasciatum e C. kamakan, pela menor altura do corpo na origem da nadadeira dorsal, na origem da nadadeira anal, e no pedúnculo caudal; de C. hasemani, pela menor distância entre a ponta do focinho e a nadadeira pélvica, a ponta do focinho e a nadadeira anal, e a ponta do focinho e a ponta da nadadeira anal. A nova espécie forma um grupo presumidamente monofilético com C. alipioi e C. kamakan.(AU)

Remarkable Geographic Structuring of Rheophilic Fishes of the Lower Araguaia River.

Rapids and waterfalls, and their associated fauna and flora are in peril. With the construction of each new hydroelectric dam, more rapids and waterfalls are destroyed, leading to the disappearance of associated fauna and flora. Areas of rapids harbor distinct, highly endemic rheophilic fauna and flora adapted to an extreme environment. Rheophilic habitats also have disjunct distribution both within and across rivers. Rheophilic habitats thus represent islands of suitable habitat separated by stretches of unsuitable habitat. In this study, we investigated to what extent, if any, species of cichlid and anostomid fishes associated with rheophilic habitats were structured among the rapids of Araguaia River in the Brazilian Amazon. We tested both for population structuring as well as non-random distribution of lineages among rapids. Eight of the nine species had multiple lineages, five of these nine species were structured, and three of the eight species with multiple lineages showed non-random distribution of lineages among rapids. These results demonstrate that in addition to high levels of endemicism of rheophilic fishes, different rapids even within the same river are occupied by different lineages. Rheophilic species and communities occupying different rapids are, therefore, not interchangeable, and this realization must be taken into account when proposing mitigatory/compensatory measures in hydroelectric projects, and in conservation planning.

Teleocichla preta, a new species of cichlid from the Rio Xingu Basin in Brazil (Teleostei: Cichlidae).

Teleocichla preta nov. sp. inhabits the rapids along the Rio Xingu and lower portion of the Rio Iriri. It is the largest species in the genus, reaching 121·3 mm standard length (LS ) while others do not reach more than 87·8 mm LS . Teleocichla preta is distinguished from all other species of Teleocichla by the unique blackish (in live specimens) or dark brown (preserved specimens) overall colouration of the body, which masks the faint vertical bars or zig-zag pattern of blotches on the flanks. Teleocichla preta also has a deeper body and a deep laterally compressed caudal peduncle, unlike any other congener, as well as a stout lower pharyngeal tooth plate bearing molariform teeth on its median area.

A new large species of Myloplus (Characiformes, Serrasalmidae) from the Rio Madeira basin, Brazil.

Myloplus zorroi sp. n. is described from the Rio Madeira Basin in Amazonia. The new species had been treated as an undescribed Tometes species because of the absence of a marked abdominal keel and few small spines forming its prepelvic serrae, features commonly found in the species of the Myleus clade of the Serrasalmidae (species of genera Myleus, Mylesinus, Ossubtus and Tometes) and also in species of Utiaritichthys. Myloplus zorroi sp. n. shares the following characters with its congeners and Utiaritichthys: molariform teeth (versus incisiform teeth in Myleus clade members); a labial row of premaxillary teeth separated from lingual row by an internal gap (versus absence of internal gap between premaxillary teeth rows); and an ascending process of premaxilla wide from its base to the tip (versus ascending process tapering from its base to the tip). Like other Myloplus species, Myloplus zorroi sp. n. differs from Utiariticthys by having a deeper body, approximately 60% of standard length (versus usually less than 50% of standard length). Considering all the morphological evidence, including the presence of 13-19 low spines forming the prepelvic serrae in Myloplus zorroi sp. n. versus more than 20 high spines forming a marked prepelvic keel in other species of Mylopus, the new species is here assigned to Myloplus. Comparisons of the new species with nominal species of Myloplus, representatives of the Myleus clade, and other related taxa are provided.

Tometes camunani (Characiformes: Serrasalmidae), a new species of phytophagous fish from the Guiana Shield, rio Trombetas basin, Brazil

A new species of Serrasalmidae, Tometes camunani, is described from the upper drainages of the rio Trombetas basin, Pará State, Brazil. The new species is distinguished from its congeners by having neurocranium with a slight concavity at the level of the frontal bone (vs. concavity absent, dorsal profile of neurocranium straight). It can be further distinguished from its congeners by having teeth with central cusp taller and acute (vs. central cusp shorter and with rounded edge in T. trilobatus), a terminal mouth (vs. upturned mouth in T. lebaili), and 12-26 prepelvic spines (vs. 0-9 in T. makue). The new species is strictly rheophilic like other species of Tometes, and occurs exclusively in the rapids of shield rivers, complex and fragile biotopes that are threatened by anthropogenic activities. An identification key to the species of the Myleus group is provided.

Uma espécie nova de Serrasalmidae, Tometes camunani, é descrita para as drenagens superiores da bacia do rio Trombetas, estado do Pará, Brasil. A espécie nova distingue-se dos congêneres pela presença de uma ligeira concavidade no neurocrânio na altura do frontal (vs. concavidade ausente, perfil dorsal do neurocrânio reto). Também pode ser adicionalmente distinguido dos seus congêneres por possuir dentes com a cúspide central mais alta e cume agudo (vs. cúspide central mais baixa e com cume arredondado em T. trilobatus), a boca terminal (vs. boca orientada para cima em T. lebaili), e 12-26 espinhos pré-pélvicos (vs. 0-9 em T. makue). A espécie nova é estritamente reofílica, como as demais espécies de Tometes, e ocorre exclusivamente nas zonas encachoeiradas dos rios de escudo, biótopos complexos, frágeis e ameaçados por ações antropogênicas. Uma chave de identificação para as espécies do grupo Myleus é apresentada.

Epidemiology of Alcohol-Related Accidents and the Grand Rapids Study.

Although it was evident from the early years of this century that alcohol was associated with motor vehicle injury, and although strict laws were enacted in both the U.S. and elsewhere imposing severe penalties for drunken driving, in the U.S. drinking and driving was so widespread that it was generally not viewed as a major offense. Severe penalties were rarely imposed, and the practice of reducing charges was commonplace. Objective data on the relationship between alcohol and crash involvement were not available. The Grand Rapids Study, first published in 1964, clearly documented for the first time the rapid acceleration of crash risk associated with increasing blood alcohol concentration. This study provided the basis for educating the public and enacting stricter laws governing drinking and driving, as well as the basis for much additional research. When the citizen action groups came into being, the solid knowledge foundation that had been established was translated into programs that have greatly reduced alcohol-related injury and death on the highway. In the last two decades unprecedented progress has been made in this regard, with the proportion of fatal crashes that are alcohol-related steadily decreasing in every age group. The Grand Rapids Study remains as a landmark contribution that continues to be used in developing and implementing programs to reduce drunken driving.